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(a more healthful) chocolate chip cookie recipe

June 06, 2013

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One of my students asked me the other day if I had a good chocolate chip cookie recipe and I instinctively said, “Sure, just check my website.”  To which she replied, “I did.  But all you have on there is your Oatmeal Chocolate Chip Cookie recipe.”  And then it hit me.  I have neither taught in a class nor posted my favorite chocolate chip cookie recipe.  Gasp!  Coincidentally, Mr. Picky had been asking if we could make homemade ice cream sandwiches, so I got to work lickety split!

In my defense, there are good reasons I haven’t posted my chocolate chip cookie recipe.  First of all, I do use refined white sugar because it just makes the best cookie.  But it isn’t exactly clean and healthful and I want this site to be your destination for high quality recipes.  However, even with the white and brown sugars, I use whole grain flours and everything is organic so these will be waaaaaaay better for you than bakery cookies or packaged (really now?) ones.  It’s all about balance and moderation!

The other issue is that I keep changing my recipe when I learn something new to make them even better than the last time.  And this has happened often.  Many of you are so in the know about food trends that you might think my ah-ha chocolate chip moments are sooooo 2005, but I never said I was an early adopter.  Let me first make it clear what kind of chocolate chip cookie I love, because that’s what you’re getting here — my favorite.  If you love the thin and crispy kind, hmmmm, today’s not your day.  Cakey?  Yeah, not me.  Milk chocolate?  Don’t waste my time!  Friends, I like a cookie with some heft and substance, something that you can sink your teeth into.  But I also don’t want a greasy cookie which makes me feel like I’m sucking on butter.  Slightly crispy on the outside and chewy on the inside with chunks of semisweet or dark chocolate is the way I roll.  Sometimes I’m feeling fancy and I’ll add a pinch of flaky sea salt on on the tops and that is just heaven.

Something I learned to achieve my perfect cookie is to use cold butter instead of room temperature, which is a trick I learned from Mrs. Fields (not that I met her, but that’s how she makes her cookies.)  The combination of cold butter and  a low oven temperature help to keep the cookie from spreading out too thin and too fast.  I also started adding a little oat flour after I saw this Neiman Marcus cookie recipe which I found out later was not the official recipe but the oat flour stayed in mine.  The oat flour makes the cookie a little nuttier and dense.  Ina Garten taught me (via television, of course) that a chocolate bar cut into pieces is much more satisfying than chocolate chips, although I do use those often.  And every fancy restaurant in the last several years has added a pinch of flaky sea salt to the tops of their cookies — a smart and delicious move.

I was getting ready to bake a batch of cookies when I received a sample of a new, alternative sweetener called Habitall.  I normally don’t try new products because I have strict standards — no BPA, no GMO’s, etc. and what some manufacturers consider to be “natural” may not pass muster with me.  But I was intrigued by this product because it contains naturally-derived, non-GMO sweeteners and replicates sugar 1:1.  It is also non-glycemic and low-calorie.  Interesting.   So I made three batches of cookies, one of which used Habitall.  I had to add a teaspoon of molasses to compensate for the lack of brown sugar, but otherwise I subbed it 1:1.  The cookies were almost identical to the ones with real sugar.  Just an FYI, I am not being compensated for using Habitall, but I did receive the product for free.  So this is my honest opinion.  I’m still doing my research on Habitall, but if you’d like to learn more about it, check out their website here.

these cookies were made with Habitall and I also grated some of the chocolate into the batter

It may have taken me a while to bring it to you, but I’m sure with certain special occasions coming up, like Father’s Day or end-of-the-year parties, it’s never too late to try a great chocolate chip cookie recipe.  Of course, if you have the latest and greatest twist on chocolate chip cookies, I’m always open to improvement!


(more healthful) chocolate chip cookies

makes 48  2 3/4-inch cookies (cut the recipe in half to make 24 or refrigerate the dough for up to a week)


1 cup (2 sticks) cold unsalted butter or organic Earth Balance, cut into ½-inch pieces

¾ cup cane sugar

1 cup brown sugar or Muscovado sugar

1 teaspoon baking soda

2 large eggs

1 ½ teaspoon pure vanilla extract

2 cups whole wheat pastry flour or white whole wheat flour

1 cup oat flour (you can take a cup of rolled oats and process them in the food processor to make your own oat flour)

1 teaspoon aluminum-free baking powder

1 teaspoon fine sea salt

18 ounces semi-sweet or dark chocolate bars, chopped coarsely or use chocolate chips

1 ½ cups chopped walnuts or pecans (optional)

flaky sea salt (optional)



  1. Preheat oven to 300 degrees.  Line 2 baking sheets with unbleached parchment paper or silicone mats.
  2. Place the butter and sugars in the bowl of stand mixer and blend on medium speed until the mixture is smooth.
  3. Add the baking soda, eggs and vanilla to the mixing bowl and mix until combined.
  4. In a medium bowl whisk together the flours, baking powder and sea salt.  Add to the butter mixture and blend on low speed until just combined.
  5. Stir in the chocolate and nuts.
  6. Scoop the dough with a 1 ¾ -inch ice cream scooper onto the prepared baking sheets or use a tablespoon.  Space them evenly apart.  I was able to get 12 on each sheet.
  7. Bake 18-20 minutes or until just set.  The cookies will be slightly soft in the center.  If you like them crispier, bake them for up to 23 minutes.  Allow to cool on the baking sheets 2 minutes before transferring them to a cooling rack.  Repeat with the remaining dough.


Notes:  raw cookie dough can be frozen, but it’s a great idea to scoop the dough into balls first and freeze those so you can just pull out as many as you want to bake instead of having to defrost the whole batch of dough.  I have even baked cookies in the toaster oven!



28 Responses to “(a more healthful) chocolate chip cookie recipe”

  1. Amanda says:

    Do you use dark or light Muscovado sugar? Going to make these today with the kids!

  2. Maite López says:

    I’m having then in the oven, i can’twait to have them done. Pamela when you say 300 degres is farenheit? Because you also said that is preferable low temperature in the oven and cold butter. Thamk you for the receipe

  3. Mint says:

    Absolute love this receipt, best choc chip ever!!!! Beautiful.
    Thank you.
    Any tip to make the cooky more rang shape ?
    I own a cafe in NewZealand, if you have any beautiful receipts please send me the link.

  4. Karen says:

    When you used the Habitall, did you substitute both the white and brown sugars? In other words, did you use 1 and 3/4 cup? I already use pure Erythritol but it isn’t as sweet as sugar and it is expensive. Would like to try this product.

    • Pamela says:

      I substituted Habitall for both the white and brown, and added a teaspoon of molasses to make up for the moisture in the brown sugar.

  5. Sharon says:

    Love these cookies.
    Made a batch today using coconut sugar instead of the brown sugar. Have you tried coconut sugar?

    • Pamela says:

      In this recipe or in general? I use coconut sugar quite often, especially in place of brown sugar. I like it a lot! Did you sub it for the brown sugar or both sugars? Glad you enjoyed these!

  6. Lexi says:

    Oh my Lord, these cookies are DELICIOUS!!! The title, “(a more healthful) chocolate chip cookie” made me think that they would be on the bland side. No where near! Same thing with the pulled bbq chicken. You have a new follower. Thank you for sharing these yummy recipes! :)

    • Pamela says:

      Welcome, Lexi! You know, you bring up a good point about using the word “healthful” when describing food, especially treats. I am always wary to do so because it does have a connotation of something not tasty, etc. So glad you gave these a try despite that!

  7. Rebecca Foster says:

    Why do you not mix the baking soda with the other dry ingredients?

    • Pamela says:

      For the life of me I can’t remember where I picked this step up, but I’ve been doing it ever since. I think perhaps the baking soda gets activated by the brown sugar more quickly…no idea, but the cookies are delicious!

  8. Devon says:

    The egg substitute worked! :)

    • Pamela says:

      So sorry I didn’t get back to you in time, but glad that the flax eggs worked. For anyone wishing to make these cookies egg free, mix 2 Tbs. ground flax meal with 6 Tbs. warm water and allow to sit for 15 minutes to gel before adding to sugar and butter mixture. Thanks, Devon!

  9. Devon says:

    Do you think I could use your flaxseed/water egg substitute in this recipe in place of the two eggs? Thanks, Pamela!

  10. Naz says:

    Forgot to ask…can I use GF oats to make the oat flour?

  11. Naz says:

    Awesome! I’m having 4 little girls over for an after school play date. This will definitely hit the spot – and maybe buy me extra fun mommy points! Going to look into Habitall. Thanks!

  12. How about substituting Truvia–a blend of stevia and sugar for just cane sugar? Especially if you are a diabetic. May still be too many carbs.

    • Pamela says:

      Diane, I think Truvia is processed stevia and “somehow” gets converted into something called “rebiana,” which you couldn’t make in your kitchen if you tried. You could dry stevia and make powdered stevia or make an extract of stevia on your own. But the crystallized end product called Truvia, not so convinced it’s safe. Honestly, anything made by Cargill and Coca-Cola makes me leary. I know, however, there are many people who are sensitive to any sugars, in which case these cookies probably aren’t the best idea since they include sweetened chocolate chips and flour. :( Thanks for the suggestion, though!

  13. Anica says:

    That is the same question I’ve been meaning to ask you! I will be making these this weekend as ice cream cookie sandwiches. Yay!!

  14. Libby Voulgarakis says:

    Can’t wait to try this recipe, the Grand kids will be so happy!

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